steshinoki
diff --git a/‎.github/workflows/scrape_talks.yml
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diff --git a/‎.gitignore
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diff --git a/‎Dockerfile
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diff --git a/‎Gemfile
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diff --git a/‎README.md
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diff --git a/‎_config.yml
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diff --git a/‎_config_docker.yml
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diff --git a/‎_data/navigation.yml
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diff --git a/‎_includes/archive-single-cv.html
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diff --git a/‎_includes/archive-single-talk-cv.html
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@@ -0,0 +1,36 @@
+name: Scrape Talk Locations
+
+on:
+  push:
+    paths:
+      - 'talks/**'
+      - 'talkmap.ipynb'
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.9'  # Specify the Python version you need
+
+    - name: Install dependencies
+      run: |
+        pip install jupyter pandas requests beautifulsoup4 geopy  # Add other dependencies as needed
+        pip install getorg --upgrade
+
+    - name: Run Jupyter Notebook
+      run: |
+        jupyter nbconvert --to notebook --execute talkmap.ipynb --output talkmap_out.ipynb
+
+    - name: Commit changes
+      run: |
+        git config user.name "github-actions[bot]"
+        git config user.email "github-actions[bot]@users.noreply.github.com"
+        git add .
+        git commit -m "Automated update of talk locations" || echo "No changes to commit"
+        git push
@@ -1,5 +1,6 @@
-# Ignore the contents of the _site directory
+# Ignore the contents of the _site directory and other cache directories
 _site/
+.sass-cache/
 
 # Ignore the directory for local files during development
 local/
 
@@ -0,0 +1,21 @@
+# Base image: Ruby with necessary dependencies for Jekyll
+FROM ruby:3.2
+
+# Install dependencies
+RUN apt-get update && apt-get install -y \
+    build-essential \
+    nodejs \
+    && rm -rf /var/lib/apt/lists/*
+
+# Set the working directory inside the container
+WORKDIR /usr/src/app
+
+# Copy Gemfile into the container (necessary for `bundle install`)
+COPY Gemfile ./
+
+# Install bundler and dependencies
+RUN gem install bundler:2.3.26 && bundle install
+
+# Command to serve the Jekyll site
+CMD ["jekyll", "serve", "-H", "0.0.0.0", "-w", "--config", "_config.yml,_config_docker.yml"]
+
@@ -1,28 +1,12 @@
-source "https://rubygems.org"
+source 'https://rubygems.org'
 
-# Hello! This is where you manage which Jekyll version is used to run.
-# When you want to use a different version, change it below, save the
-# file and run `bundle install`. Run Jekyll with `bundle exec`, like so:
-#
-#     bundle exec jekyll serve
-#
-# This will help ensure the proper Jekyll version is running.
-# Happy Jekylling!
-
-gem "github-pages", group: :jekyll_plugins
-
-# If you want to use Jekyll native, uncomment the line below.
-# To upgrade, run `bundle update`.
-
-# gem "jekyll"
-
-gem "wdm", "~> 0.1.0" if Gem.win_platform?
-
-# If you have any plugins, put them here!
 group :jekyll_plugins do
-  # gem "jekyll-archives"
-  gem "jekyll-feed"
+  gem 'jekyll'
+  gem 'jekyll-feed'
   gem 'jekyll-sitemap'
-  gem 'hawkins'
-  gem "webrick", "~> 1.8"
+  gem 'jekyll-redirect-from'
+  gem 'jemoji'
+  gem 'webrick', '~> 1.8'
 end
+
+gem 'github-pages'
@@ -1,3 +1,3 @@
 Personal website for Stéphanie.
 
-Based on [https://academicpages.github.io/](https://academicpages.github.io/)
+Based on [https://academicpages.github.io/](https://academicpages.github.io/)
@@ -8,6 +8,7 @@
 
 # Basic Site Settings
 locale                   : "en-US"
+site_theme               : "default"
 title                    : "Stéphanie Tramontin Shinoki"
 title_separator          : "-"
 name                     : &name "Stéphanie T. Shinoki"
@@ -38,6 +39,7 @@ author:
   semantic         : # URL
   pubmed           : #"https://www.ncbi.nlm.nih.gov/pubmed/?term=john+snow"
   researchgate     : # URL
+  scopus           : # URL
 
   # Repositories and software development
   bitbucket        : # Username - Update with your username on the site
@@ -71,16 +73,24 @@ author:
   wikipedia        : # Username
   xing             : # Username
   youtube          : # Username
-  zhihu            : # URL
+  zhihu            : # Username
 
+# Publication Category - The following the list of publication categories and their headings
+publication_category:
+  books:
+    title: 'Books'
+  manuscripts:
+    title: 'Journal Articles'    
+  conferences:
+    title: 'Conference Papers'
 
 # Site Settings
 teaser                   :  # filename of teaser fallback teaser image placed in /images/, .e.g. "500x300.png"
 breadcrumbs              : false # true, false (default)
 words_per_minute         : 160
 future                   : true
 read_more                : "disabled" # if enabled, adds "Read more" links to excerpts
-talkmap_link             : false #change to true to add link to talkmap on talks page
+talkmap_link             : false      #change to true to add link to talkmap on talks page
 comments:
   provider               : # false (default), "disqus", "discourse", "facebook", "google-plus", "staticman", "custom"
   disqus:
@@ -152,23 +162,26 @@ exclude:
   - "*.sublime-workspace"
   - .asset-cache
   - .bundle
+  - .github
   - .jekyll-assets-cache
   - .sass-cache
-  - CHANGELOG
-  - Capfile
-  - Gemfile
-  - Gruntfile.js
-  - LICENSE
-  - README
-  - Rakefile
   - assets/js/_main.js
   - assets/js/plugins
   - assets/js/vendor
+  - CHANGELOG
+  - Capfile
   - config
+  - Dockerfile
+  - Gemfile
+  - Gruntfile.js
   - gulpfile.js
+  - LICENSE
+  - local
   - log
   - node_modules
-  - package.json
+  - package.json*
+  - Rakefile
+  - README
   - tmp
   - vendor
 keep_files:
@@ -198,7 +211,7 @@ kramdown:
   enable_coderay: false
 
 
-# Collections
+# These settings control the types of collections used by the template
 collections:
   teaching:
     output: true
@@ -217,7 +230,7 @@ collections:
     permalink: /:collection/:path/
 
 
-# Defaults
+# These settings control how pages and collections are included in the site
 defaults:
   # _posts
   - scope:
@@ -298,17 +311,20 @@ timezone: America/Sao_Paulo # http://en.wikipedia.org/wiki/List_of_tz_database_t
 
 # Plugins
 plugins:
+  - jekyll-feed
+  - jekyll-gist
   - jekyll-paginate
   - jekyll-sitemap
-  - jekyll-gist
-  - jekyll-feed
   - jekyll-redirect-from
-# mimic GitHub Pages with --safe
+  - jemoji
+
+# Mimic GitHub Pages with --safe
 whitelist:
+  - jekyll-feed
+  - jekyll-gist
   - jekyll-paginate
   - jekyll-sitemap
-  - jekyll-gist
-  - jekyll-feed
+  - jekyll-redirect-from
   - jemoji
 
 
 
@@ -0,0 +1 @@
+url: ""
@@ -1,4 +1,9 @@
-# main links links
+# The following is the order of the links in the header of the website.
+#
+# Changing the order here will adjust the order and you can also add additional
+# links. Removing a link prevents it from showing in the header, but does not
+# prevent it from being included in the site.
+
 main:
   - title: "Research"
     url: /research/
 
@@ -34,7 +34,7 @@ <h3 class="archive__item-title" itemprop="headline">
       {% endif %}
     </h3>
     {% if post.read_time %}
-      <p class="page__meta"><i class="fa fa-clock-o" aria-hidden="true"></i> {% include read-time.html %}</p>
+      <p class="page__meta"><i class="fa fa-clock" aria-hidden="true"></i> {% include read-time.html %}</p>
     {% endif %}
     {% if post.venue%}<p class="archive__item-excerpt" itemprop="description">{{ post.citation }}</p> {% endif %}
     </li>
 
@@ -33,7 +33,7 @@ <h3 class="archive__item-title" itemprop="headline">
         <a href="{{ base_path }}{{ post.url }}" rel="permalink">{{ title }}</a>
       {% endif %}
     </h3>
-    {% if post.date %}<p class="page__meta"><i class="fa fa-clock-o" aria-hidden="true"></i> {{ post.date | date: '%B %d, %Y' }}</p>{% endif %}
+    {% if post.date %}<p class="page__meta"><i class="fa fa-clock" aria-hidden="true"></i> {{ post.date | date: '%B %d, %Y' }}</p>{% endif %}
     {% if post.venue%}<p class="archive__item-excerpt" itemprop="description">{{post.type}} at {{ post.venue }},  {{post.location}}</p>{% endif %}
     </li>
   </article>
Original file line number	Diff line number	Diff line change
`@@ -1,3 +1,3 @@`
`1`	`1`	`Personal website for Stéphanie.`
`2`	`2`
`3`		`-Based on [https://academicpages.github.io/](https://academicpages.github.io/)`
	`3`	`+Based on [https://academicpages.github.io/](https://academicpages.github.io/)`